8RYU
High pH (8.0) nitrite-bound MSOX movie series dataset 10 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [6.9 MGy]
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.77491 |
Spacegroup name | P 63 |
Unit cell lengths | 104.300, 104.300, 64.470 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.204 - 1.450 |
Rwork | 0.140 |
R-free | 0.16430 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.932 |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.204 | 1.470 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.082 | 0.999 |
Rmeas | 0.101 | 1.281 |
Rpim | 0.058 | 0.785 |
Number of reflections | 70743 | 3508 |
<I/σ(I)> | 9.4 | |
Completeness [%] | 100.0 | |
Redundancy | 5.5 | 4.3 |
CC(1/2) | 0.997 | 0.392 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 100 mM Tris pH 7.3, 1.8 M Ammonium Sulphate |