8RH6
Crystal structure of HLA-A*11:01 in complex with SVLNDILSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953732 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 84.850, 84.850, 311.296 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.500 - 3.320 |
R-factor | 0.2228 |
Rwork | 0.221 |
R-free | 0.25140 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.001 |
RMSD bond angle | 0.409 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.21rc1_5127) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.500 | 3.590 |
High resolution limit [Å] | 3.320 | 3.320 |
Rmerge | 0.215 | 0.877 |
Rmeas | 0.248 | 1.014 |
Rpim | 0.119 | 0.495 |
Number of reflections | 20087 | 4051 |
<I/σ(I)> | 5.9 | 1.6 |
Completeness [%] | 99.6 | 99.5 |
Redundancy | 4.1 | 3.8 |
CC(1/2) | 0.989 | 0.553 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 25% PEG3350, 0.2M NaCl and 0.1M Tris HCl pH8.5 |