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8RFS

Low pH (5.5) nitrite-bound MSOX movie series dataset 11 of the copper nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110 [6.71 MGy] - water ligand

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-18
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.855
Spacegroup nameP 63
Unit cell lengths104.450, 104.450, 64.600
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 1.540
R-factor0.14664
Rwork0.145
R-free0.17173
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.934
Data reduction softwarexia2
Data scaling softwareAimless
Refinement softwareREFMAC (5.8.0419)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.2301.570
High resolution limit [Å]1.5401.540
Rpim0.0340.764
Number of reflections592502854
<I/σ(I)>111
Completeness [%]99.898.6
Redundancy5.44.6
CC(1/2)0.9990.344
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.32930.1 M Tris pH 7.3, 1.8 M Ammonium SUlphate

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PDB entries from 2024-10-09

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