Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8RDM

Holomycin methyltransferase DtpM with SAH

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2023-04-29
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)1.0
Spacegroup nameP 41 2 2
Unit cell lengths53.210, 53.210, 207.950
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 1.750
R-factor0.17805
Rwork0.176
R-free0.21912
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle1.206
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.0001.850
High resolution limit [Å]1.7501.750
Rmerge0.0700.675
Number of reflections308224611
<I/σ(I)>11.51.9
Completeness [%]98.498.5
Redundancy5.35.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP72932.1 M D/L-malic acid pH 7.0

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon