8QPS
Deoxyribose-5-phosphate aldolase (DERA) from Geobacillus sp.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9688 |
Spacegroup name | P 31 |
Unit cell lengths | 57.230, 57.230, 97.030 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.670 - 1.640 |
R-factor | 0.1937 |
Rwork | 0.192 |
R-free | 0.23650 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.870 |
Data reduction software | xia2 (0.5.898-g5f4e2fb3-dials-1.14) |
Data scaling software | XSCALE (Mar 15, 2019) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.680 | 1.700 |
High resolution limit [Å] | 1.640 | 1.640 |
Rmerge | 0.057 | 0.684 |
Rmeas | 0.072 | 0.854 |
Rpim | 0.043 | 0.496 |
Number of reflections | 42879 | 4272 |
<I/σ(I)> | 10.1 | 1.3 |
Completeness [%] | 98.4 | 98.3 |
Redundancy | 2.56 | 2.58 |
CC(1/2) | 0.993 | 0.503 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 28% PEG 4000, 0.1 M Tris buffer |