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8QNF

Crystal structure of the Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2015-02-07
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.976250
Spacegroup nameF 2 2 2
Unit cell lengths121.650, 160.060, 163.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.940 - 1.650
R-factor0.1781
Rwork0.177
R-free0.19680
Structure solution methodSAD
RMSD bond length0.015
RMSD bond angle1.418
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.9401.700
High resolution limit [Å]1.6501.650
Number of reflections813292759
<I/σ(I)>12.432.01
Completeness [%]85.0
Redundancy4.9
CC(1/2)0.9970.694
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP277Protein (stored in 50mM Kpi, 150 mM NaCl, pH 7.0) crystallised at 30mg/mL at 4 degC in 100 mM Tris pH 8.5, 3.5 M NaFormate 25% glycerol used as cryoprotectant.

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PDB entries from 2024-10-09

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