8QG6
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID14-4 |
| Synchrotron site | ESRF |
| Beamline | ID14-4 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-12-12 |
| Detector | ADSC QUANTUM 315r |
| Wavelength(s) | 0.979288 |
| Spacegroup name | I 2 2 2 |
| Unit cell lengths | 62.800, 75.360, 118.410 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 34.965 - 2.142 |
| R-factor | 0.1951 |
| Rwork | 0.194 |
| R-free | 0.21780 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.709 |
| Data reduction software | MOSFLM |
| Data scaling software | Aimless |
| Phasing software | PHENIX |
| Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 63.580 | 2.200 |
| High resolution limit [Å] | 2.140 | 2.140 |
| Rmerge | 0.102 | 0.588 |
| Rmeas | 0.111 | 0.657 |
| Rpim | 0.043 | 0.287 |
| Total number of observations | 91783 | 6409 |
| Number of reflections | 14311 | 1271 |
| <I/σ(I)> | 10.8 | 1.7 |
| Completeness [%] | 90.4 | |
| Redundancy | 6.4 | 5 |
| CC(1/2) | 0.992 | 0.940 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |






