Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8QG6

Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a di-adenosine derivative

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-4
Synchrotron siteESRF
BeamlineID14-4
Temperature [K]100
Detector technologyCCD
Collection date2012-12-12
DetectorADSC QUANTUM 315r
Wavelength(s)0.979288
Spacegroup nameI 2 2 2
Unit cell lengths62.800, 75.360, 118.410
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.965 - 2.142
R-factor0.1951
Rwork0.194
R-free0.21780
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.709
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]63.5802.200
High resolution limit [Å]2.1402.140
Rmerge0.1020.588
Rmeas0.1110.657
Rpim0.0430.287
Total number of observations917836409
Number of reflections143111271
<I/σ(I)>10.81.7
Completeness [%]90.4
Redundancy6.45
CC(1/2)0.9920.940
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291.1530 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon