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8QFT

X-ray structure of non-toxic non-hemagglutinin (NTNH) protein from botulinum neurotoxin serotype X

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2019-01-27
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9795
Spacegroup nameP 31 2 1
Unit cell lengths174.106, 174.106, 138.023
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution73.740 - 3.300
Rwork0.276
R-free0.33260
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle1.044
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0405)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]87.0503.450
High resolution limit [Å]3.3003.300
Rmerge0.2022.772
Rmeas0.2082.859
Rpim0.0470.699
Total number of observations70970472911
Number of reflections367274424
<I/σ(I)>70.6
Completeness [%]100.0
Redundancy19.316.5
CC(1/2)0.9990.924
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.529415 mg/ml NTNH/X in 20 mM MES pH 5.5, 150 mM NaCl, 0.5 mM TCEP mixed in 2:1 volume ratio with 90 mM MES/imidazole pH 6.5, 9% (w/v) PEG 4,000, 18% (v/v) glycerol, and 3% (w/v) dextran sulfate sodium salt

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PDB entries from 2024-09-11

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