8QC0
Nucleoside 2'deoxyribosyltransferase from Chroococcidiopsis thermalis PCC 7203 WT ribosylated
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2021-05-12 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 63 |
Unit cell lengths | 135.240, 135.240, 87.220 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.270 - 2.020 |
R-factor | 0.2152 |
Rwork | 0.214 |
R-free | 0.24080 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.108 |
Data reduction software | xia2 (3.4.2) |
Data scaling software | xia2 (3.4.2) |
Phasing software | PHENIX (1.19.2-4158) |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.500 | 2.050 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.192 | 5.534 |
Rmeas | 0.194 | |
Rpim | 0.031 | 0.862 |
Number of reflections | 59536 | 2939 |
<I/σ(I)> | 15.6 | 0.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 39.2 | 42.1 |
CC(1/2) | 0.999 | 0.286 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 21.43% v/v PEG 6000; 0.1 M Tris pH 8; 0.5 M Zinc chloride |