8Q9Y
The structure of thiocyanate dehydrogenase from Pelomicrobium methylotrophicum in complex with inhibitor thiourea at 1.10 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.7 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.710, 96.670, 147.530 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.170 - 1.100 |
R-factor | 0.10814 |
Rwork | 0.107 |
R-free | 0.12460 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.018 |
RMSD bond angle | 1.969 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.150 |
High resolution limit [Å] | 1.100 | 10.000 | 1.100 |
Rmerge | 0.025 | 0.013 | 0.321 |
Rmeas | 0.030 | 0.016 | 0.395 |
Number of reflections | 357145 | 442 | 45383 |
<I/σ(I)> | 17.52 | ||
Completeness [%] | 93.0 | ||
Redundancy | 2.8 | ||
CC(1/2) | 1.000 | 0.999 | 0.854 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 288 | 0.2 M sodium formate, 20% PEG 3350 |