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8Q50

Nitrogenase Fe protein from Methanothermococcus thermolithotrophicus, tetragonal crystalline form at 1.91-A resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-11-22
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.74013
Spacegroup nameP 43 21 2
Unit cell lengths98.895, 98.895, 61.149
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution52.010 - 1.910
R-factor0.2032
Rwork0.202
R-free0.23050
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle1.431
Data reduction softwareautoPROC
Data scaling softwareautoPROC
Phasing softwarePHASER
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]52.0101.940
High resolution limit [Å]1.9101.910
Rmerge0.1593.120
Rmeas0.1613.190
Rpim0.0250.644
Number of reflections242001183
<I/σ(I)>15.91.4
Completeness [%]100.0100
Redundancy41.223.9
CC(1/2)0.9970.616
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.6293.15The purified protein was crystallised at a final concentration of 6 mg/ml by spotting 0.5 ul of crystallisation solution with 0.5 ul of protein sample. Crystallization was done anaerobically in a Coy tent containing N2/H2 (97:3%) atmosphere. The screening was done at 20 degrees Celsius on 96-Well MRC 2-drop polystyrene (SWISSCI) plates containing 90 ul of crystallization solution. The crystallisation solution in which crystals were obtained contained 30 % v/v 2-methyl-2,4-pentanediol, 100 mM sodium acetate, pH 4.6 and 20 mM calcium chloride.

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PDB entries from 2024-10-09

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