8Q2E
The 1.68-A X-ray crystal structure of Sporosarcina pasteurii urease inhibited by thiram and bound to dimethylditiocarbamate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 131.511, 131.511, 189.017 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 114.150 - 1.680 |
R-factor | 0.13942 |
Rwork | 0.138 |
R-free | 0.16318 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.698 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 114.500 | 1.710 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.136 | 2.400 |
Rmeas | 0.142 | 2.500 |
Rpim | 0.032 | 0.556 |
Number of reflections | 109674 | 5354 |
<I/σ(I)> | 18.9 | 1.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.7 | 20.4 |
CC(1/2) | 0.999 | 0.738 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 100 mM citrate, pH 6.3, 1.6-2.1 M ammonium sulfate |