8PXJ
Structure of Whitewater Arroyo virus GP1 glycoprotein, solved at wavelength 2.75 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I23 |
Synchrotron site | Diamond |
Beamline | I23 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2016-07-20 |
Detector | DECTRIS PILATUS 12M |
Wavelength(s) | 2.7552 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 106.830, 106.830, 74.860 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.300 - 2.750 |
R-factor | 0.25059 |
Rwork | 0.249 |
R-free | 0.27618 |
Structure solution method | SAD |
RMSD bond length | 0.014 |
RMSD bond angle | 1.176 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | HKL2Map |
Refinement software | REFMAC (5.8.0403) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.300 | 2.848 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.140 | |
Rmeas | 0.143 | |
Rpim | 0.025 | |
Number of reflections | 6783 | 608 |
<I/σ(I)> | 21.54 | 0.88 |
Completeness [%] | 97.2 | |
Redundancy | 30.7 | |
CC(1/2) | 0.999 | 0.567 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 1.0 mg/ml protein, 0.1 M HEPES-Na pH 7.5, and 0.05 M cadmium sulphate |