8PO7
Structure of Escherichia coli HrpA in complex with ADP and dinucleotide dCdC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979183 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 80.470, 106.124, 178.276 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 89.140 - 2.260 |
R-factor | 0.1918 |
Rwork | 0.190 |
R-free | 0.23150 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.186 |
Data reduction software | XDS (BUILT 20180409) |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.190 | 2.295 |
High resolution limit [Å] | 2.257 | 2.257 |
Rmerge | 0.219 | 1.710 |
Rmeas | 0.228 | 1.776 |
Rpim | 0.063 | 0.476 |
Number of reflections | 70047 | 3566 |
<I/σ(I)> | 15.5 | 3.3 |
Completeness [%] | 96.6 | 99.8 |
Redundancy | 13 | |
CC(1/2) | 0.993 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.03M NaNO3 0.03M Na2HPO4 0.03L (NH4)2SO4 0.1M MES-Imidazole 20% ethylene glycol 10% PEG 8000 |