8PNW
Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens in holo form with PLP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.96770 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 105.935, 105.935, 51.324 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 52.970 - 1.700 |
R-factor | 0.172 |
Rwork | 0.171 |
R-free | 0.19246 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.686 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.970 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.083 | 0.481 |
Rmeas | 0.098 | 0.586 |
Rpim | 0.051 | 0.330 |
Total number of observations | 124016 | 4957 |
Number of reflections | 35723 | 1760 |
<I/σ(I)> | 10.1 | 1.3 |
Completeness [%] | 97.4 | |
Redundancy | 3.5 | 2.8 |
CC(1/2) | 0.994 | 0.792 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 288 | 0.1 M Hepes pH 7.5, 4 M NaCl |