8PMM
Structure of Nal1 protein, allele SPIKE from japonica rice, construct 31-458
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-06-22 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.978690 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 89.967, 182.917, 172.510 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 46.840 - 1.750 |
| R-factor | 0.2019 |
| Rwork | 0.200 |
| R-free | 0.23050 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.974 |
| Data reduction software | XDS (BUILT 20200417) |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 91.459 | 1.910 |
| High resolution limit [Å] | 1.748 | 1.748 |
| Rmerge | 0.077 | 1.339 |
| Rmeas | 0.080 | 1.391 |
| Rpim | 0.022 | 0.374 |
| Number of reflections | 107716 | 5386 |
| <I/σ(I)> | 18.1 | 1.9 |
| Completeness [%] | 94.9 | 61.7 |
| Redundancy | 13.5 | 13.7 |
| CC(1/2) | 0.999 | 0.800 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 4% tacsimate 12% PEG 3350 |
