8PJF
Human Leukocyte Antigen class II allotype DR1 presenting P11T->R modified influenza A virus haemagglutinin (HA)306-318 PKYVKQNTLKLAR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-23 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 91.350, 134.430, 40.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.140 - 1.480 |
R-factor | 0.1684 |
Rwork | 0.167 |
R-free | 0.19200 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.401 |
Data reduction software | xia2 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.140 | 1.530 |
High resolution limit [Å] | 1.480 | 1.480 |
Rmerge | 0.080 | 1.627 |
Rmeas | 0.086 | 1.755 |
Rpim | 0.032 | 0.653 |
Number of reflections | 83579 | 8248 |
<I/σ(I)> | 12.79 | 1.49 |
Completeness [%] | 99.7 | 99.92 |
Redundancy | 7.1 | 7.1 |
CC(1/2) | 0.998 | 0.527 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 0.1 M MES pH 7.0, 25 % PEG4000, 0.2 M ammonium sulphate |