8PIO
Crystal structure of Ser33 in complex with PHP (3-phosphohydroxypyruvate)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-02 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9999 |
Spacegroup name | P 1 |
Unit cell lengths | 60.600, 95.150, 108.370 |
Unit cell angles | 69.84, 88.72, 85.65 |
Refinement procedure
Resolution | 52.040 - 2.600 |
R-factor | 0.22431 |
Rwork | 0.222 |
R-free | 0.26170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yba |
RMSD bond length | 0.007 |
RMSD bond angle | 1.132 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.040 | 2.693 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 68361 | 6350 |
<I/σ(I)> | 9.82 | 1.09 |
Completeness [%] | 97.9 | |
Redundancy | 5.1 | |
CC(1/2) | 0.992 | 0.604 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.1 M SPG pH=6 25 % w/v PEG 1500 7.4 mg/ml of protein in 25 mM Tris pH=7.5 and 150 mM NaCl |