8PI8
DNA binding domain of HNF-1A bound to P2-HNF4A promoter DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-20 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.703, 55.038, 202.071 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.330 - 2.300 |
R-factor | 0.2161 |
Rwork | 0.214 |
R-free | 0.26070 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.537 |
Data reduction software | XDS |
Data scaling software | XSCALE (Jan 10, 2022) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.330 | 2.360 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmeas | 0.203 | |
Number of reflections | 24010 | 1724 |
<I/σ(I)> | 6.41 | 0.6 |
Completeness [%] | 99.5 | 98.9 |
Redundancy | 7.4 | 7.8 |
CC(1/2) | 0.994 | 0.206 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 281 | 0.1 M MMT, pH 4.0, 25% w/v PEG 1500 |