8PGF
Crystal structure of the metallo-beta-lactamase VIM1 with 2941
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04 |
| Synchrotron site | Diamond |
| Beamline | I04 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-11-24 |
| Detector | DECTRIS EIGER2 XE 16M |
| Wavelength(s) | 0.979499 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 39.497, 67.627, 40.267 |
| Unit cell angles | 90.00, 93.53, 90.00 |
Refinement procedure
| Resolution | 29.050 - 1.200 |
| R-factor | 0.1174 |
| Rwork | 0.117 |
| R-free | 0.13620 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.022 |
| RMSD bond angle | 1.640 |
| Data reduction software | xia2 |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 29.050 | 1.220 |
| High resolution limit [Å] | 1.200 | 1.200 |
| Rmerge | 0.029 | 0.178 |
| Rmeas | 0.032 | 0.213 |
| Rpim | 0.012 | 0.115 |
| Number of reflections | 62636 | 2067 |
| <I/σ(I)> | 35.7 | 5.5 |
| Completeness [%] | 94.9 | 63.2 |
| Redundancy | 6.4 | 3.1 |
| CC(1/2) | 0.999 | 0.961 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 2.2M ammonium phosphate 0.1M TrisHCl, pH 8.5 |
