8PA8
Crystal structure of the metallo-beta-lactamase VIM1 with 2551
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-27 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97625 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 39.380, 67.740, 40.270 |
Unit cell angles | 90.00, 93.56, 90.00 |
Refinement procedure
Resolution | 40.190 - 1.320 |
R-factor | 0.1434 |
Rwork | 0.142 |
R-free | 0.16790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.984 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.190 | 1.350 |
High resolution limit [Å] | 1.320 | 1.320 |
Rmerge | 0.060 | 0.607 |
Rmeas | 0.066 | 0.658 |
Rpim | 0.026 | 0.252 |
Number of reflections | 48915 | 3595 |
<I/σ(I)> | 14.8 | 3.1 |
Completeness [%] | 98.9 | 98 |
Redundancy | 6.4 | 6.7 |
CC(1/2) | 0.999 | 0.856 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 2.2M ammonium phosphate 0.1M TrisHCl, pH 8.5 |