8OXR
Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-04 |
Detector | DECTRIS EIGER2 X CdTe 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 67.843, 108.714, 53.536 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.555 - 2.300 |
Rwork | 0.227 |
R-free | 0.29160 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.600 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0405) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.560 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 9135 | 855 |
<I/σ(I)> | 10.8 | 1 |
Completeness [%] | 99.8 | |
Redundancy | 13.2 | |
CC(1/2) | 1.000 | 0.620 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M sodium chloride, 0.1 M bis-tris, 1.5 M ammonium sulphate, pH 6.5 |