8OU1
Crystal structure of the SPOC domain of mouse SPOCD1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-20 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.520, 56.624, 97.657 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.600 - 1.700 |
R-factor | 0.2031 |
Rwork | 0.201 |
R-free | 0.23730 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.037 |
Data reduction software | XDS (March 15, 2019 (built 20191211)) |
Data scaling software | pointless (1.11.21) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.520 | 54.520 | 1.790 |
High resolution limit [Å] | 1.700 | 5.380 | 1.700 |
Rmeas | 0.062 | 0.030 | 0.513 |
Rpim | 0.028 | 0.014 | 0.266 |
Number of reflections | 33752 | 1205 | 4799 |
<I/σ(I)> | 13.2 | 2.1 | |
Completeness [%] | 99.2 | 99.6 | 98.7 |
Redundancy | 4.7 | 4.5 | 3.4 |
CC(1/2) | 0.999 | 0.999 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 1.6M Ammonium citrate tribasic, pH 7.5 |