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8ORK

cyclic 2,3-diphosphoglycerate synthetase from the hyperthermophilic archaeon Methanothermus fervidus

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-11
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.97625
Spacegroup nameI 2 2 2
Unit cell lengths74.264, 105.607, 156.619
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.710 - 1.640
Rwork0.177
R-free0.21300
Structure solution methodSAD
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareCRANK2
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.7101.680
High resolution limit [Å]1.6401.640
Rmerge0.077
Rmeas0.086
Rpim0.038
Number of reflections755123134
<I/σ(I)>14.1
Completeness [%]96.060.03
Redundancy55
CC(1/2)0.9900.280
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH7.5292.15Morpheus condition F7 consisting of 0.12 M Monosaccharides mix; 0.1M Buffer System 2 pH 7.5; 30% v/v Precipitant Mix 3 Buffer system 2: Sodium HEPES; MOPS (acid) pH7.5 Monosaccharides mix: 0.2M D-Glucose; 0.2M D-Mannose; 0.2M D-Galactose; 0.2M L-Fucose; 0.2M D-Xylose; 0.2M N-Acetyl-D-Glucosamine Precipitants mix 3: 40% v/v Glycerol; 20% w/v PEG 4000

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PDB entries from 2024-05-15

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