Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8OLJ

Crystal structure of Archaeoglobus fulgidus AfAgo-N protein representing N-L1-L2 domains

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2018-11-23
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.97970
Spacegroup nameP 32 2 1
Unit cell lengths75.264, 75.264, 94.722
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution53.700 - 1.400
R-factor0.1479
Rwork0.145
R-free0.17772
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.610
Data reduction softwareXDS (VERSION Jan 26, 2018 BUILT=20180126)
Data scaling softwareAimless (version 0.7.2)
Phasing softwareMOLREP (Vers 11.6.04)
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]94.7201.420
High resolution limit [Å]1.4001.400
Rmerge0.0470.908
Rmeas0.0490.967
Rpim0.0160.331
Number of reflections616243045
<I/σ(I)>23.82.3
Completeness [%]100.0100
Redundancy9.78.4
CC(1/2)0.9990.810
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP280Protein concentration 4.1 mg/ml. Reservoir: TrisHCl pH 8.0 0.05 M; iPrOH 27%; ammonium acetate 0.11 M; Bicine pH 9.0 0.05 M. Cryo-protection: short wash in 0.16 M Ammonium acetate; 0.08 M TrisHCl pH 8.5; 24% iPrOH; Glycerol 20%

232829

PDB entries from 2025-03-12

PDB statisticsPDBj update infoContact PDBjnumon