8OLD
Crystal structure of Archaeoglobus fulgidus AfAgo-N protein representing N-L1-L2 domains
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-04 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.97680 |
Spacegroup name | P 1 |
Unit cell lengths | 42.033, 57.843, 61.622 |
Unit cell angles | 73.94, 89.56, 89.75 |
Refinement procedure
Resolution | 47.630 - 1.850 |
R-factor | 0.18299 |
Rwork | 0.179 |
R-free | 0.21819 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.527 |
Data reduction software | XDS (VERSION Jun 17, 2015) |
Data scaling software | SCALA (3.3.22 : 21/07/13) |
Phasing software | MOLREP (Vers 9.2.10; 30.11.2005) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.590 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.033 | |
Rmeas | 0.044 | 0.696 |
Rpim | 0.033 | 0.492 |
Number of reflections | 44415 | 6503 |
<I/σ(I)> | 15.9 | |
Completeness [%] | 93.2 | 93.5 |
Redundancy | 3.6 | 3.6 |
CC(1/2) | 0.999 | 0.817 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 280 | NaCl 0.012 M; KCl 0.08 M; Sodium Cacodylate pH 6.0 0.04 M; MPD 50% ;spermin 0.012 M; 9 mg/ml protein concentration |