8OJ2
Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with protomor-like sequence IR7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0722 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 79.622, 79.682, 146.297 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.320 - 2.560 |
R-factor | 0.2221 |
Rwork | 0.220 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.641 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | autoPROC (1.0.5) |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 73.148 | 2.747 |
High resolution limit [Å] | 2.558 | 2.558 |
Rmerge | 0.123 | 2.670 |
Rmeas | 0.129 | |
Number of reflections | 12755 | 638 |
<I/σ(I)> | 12.8 | |
Completeness [%] | 91.3 | 41.8 |
Redundancy | 12.3 | |
CC(1/2) | 0.995 | 0.448 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 1 ul of protein at 4.6mg/ml in 15mM Hepes pH7.5, 150mM NaCl, 20mM DTT were mixed with 1 ul reservoir (0.2M Ammonium sulfate, 0.1M MES pH6.5, 24% PEG 3350) and equilibrated against 80 ul reservoir |