8OIK
D-PHAT domain (NTD) of human SAMD4A
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.968, 0.98, |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 81.829, 142.786, 137.096 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.450 - 1.620 |
R-factor | 0.2073 |
Rwork | 0.207 |
R-free | 0.22090 |
Structure solution method | MAD |
RMSD bond length | 0.008 |
RMSD bond angle | 0.947 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.050 | 1.700 |
High resolution limit [Å] | 1.620 | 1.620 |
Rmerge | 0.060 | |
Rmeas | 0.062 | |
Number of reflections | 89788 | 4488 |
<I/σ(I)> | 19.2 | |
Completeness [%] | 95.2 | |
Redundancy | 13.8 | |
CC(1/2) | 0.999 | 0.340 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 0.1 M sodium citrate pH 5.6, 8% jeffamine M-600 pH 7 |