8OFR
Human adenovirus type 25 fiber-knob protein complexed with sialic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.88561 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 127.562, 179.321, 207.897 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 64.640 - 2.510 |
R-factor | 0.22175 |
Rwork | 0.221 |
R-free | 0.23921 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.303 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 64.640 | 2.580 |
High resolution limit [Å] | 2.510 | 2.510 |
Rmerge | 0.218 | 2.268 |
Rmeas | 0.234 | 2.427 |
Rpim | 0.084 | 0.860 |
Total number of observations | 93395 | |
Number of reflections | 162833 | 11926 |
<I/σ(I)> | 6 | 0.9 |
Completeness [%] | 100.0 | |
Redundancy | 7.7 | 7.8 |
CC(1/2) | 0.988 | 0.451 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 0.1 M SPG buffer, 25 % w/v PEG 1500 |