8KI0
Crystal structure of the hemophore HasA from Pseudomonas protegens Pf-5 capturing Fe-tetraphenylporphyrin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-30 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 33.561, 158.717, 33.534 |
Unit cell angles | 90.00, 97.58, 90.00 |
Refinement procedure
Resolution | 39.680 - 1.450 |
R-factor | 0.12065 |
Rwork | 0.119 |
R-free | 0.15178 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.540 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.680 | 39.680 | 1.530 |
High resolution limit [Å] | 1.450 | 4.310 | 1.450 |
Rmerge | 0.076 | 0.055 | 0.374 |
Rmeas | 0.082 | 0.059 | 0.414 |
Number of reflections | 59034 | 2358 | 8784 |
<I/σ(I)> | 16.08 | 33.48 | 4.38 |
Completeness [%] | 95.5 | 99.7 | 87.7 |
Redundancy | 6.54 | ||
CC(1/2) | 0.998 | 0.997 | 0.907 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 100 mM Tris-HCl (pH 7.0), 1.0 M Potassium sodium tartrate, 200 mM Lithium sulfate |