8K5Y
Crystal structure of human proMMP-9 catalytic domain in complex with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-07 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.99999 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 91.530, 73.990, 77.130 |
Unit cell angles | 90.00, 103.36, 90.00 |
Refinement procedure
Resolution | 49.010 - 1.520 |
R-factor | 0.17725 |
Rwork | 0.176 |
R-free | 0.19788 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.804 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.050 | 1.610 |
High resolution limit [Å] | 1.520 | 1.520 |
Number of reflections | 76843 | 12130 |
<I/σ(I)> | 11.17 | |
Completeness [%] | 99.8 | |
Redundancy | 6.6 | |
CC(1/2) | 0.998 | 0.541 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 25% w/v Polyethylene glycol 1500, 100mM SPG buffer pH5.0 |