8JVF
Crystal structure of dephospho-coenzyme A kinase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 55.101, 55.101, 122.584 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.010 - 2.400 |
Rwork | 0.218 |
R-free | 0.25780 |
Structure solution method | SAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.722 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | SHARP |
Refinement software | REFMAC (5.8.0411) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.073 | 0.417 |
Rmeas | 0.075 | 0.425 |
Rpim | 0.015 | 0.082 |
Number of reflections | 7963 | 811 |
<I/σ(I)> | 30.7 | 10.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 24.4 | 26.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | PEG 1500, GTP |