8JOS
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.911, 71.911, 128.648 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.940 - 1.590 |
R-factor | 0.1889 |
Rwork | 0.188 |
R-free | 0.21350 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.969 |
Data reduction software | XDS (Feb 5, 2021) |
Data scaling software | XDS (Feb 5, 2021) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.960 | 47.940 | 1.680 |
High resolution limit [Å] | 1.590 | 4.740 | 1.590 |
Rmerge | 0.050 | 0.023 | 1.334 |
Rmeas | 0.054 | 0.025 | 1.431 |
Rpim | 0.020 | ||
Number of reflections | 68145 | 2777 | 10795 |
<I/σ(I)> | 18.75 | ||
Completeness [%] | 99.8 | 99.6 | |
Redundancy | 7.4 | 5.9 | |
CC(1/2) | 1.000 | 1.000 | 0.648 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 21% PEG 3350, 300mM lithium chloride |