8JI6
Crystal structure of AetD in complex with L-tryptophan
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-16 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9998 |
Spacegroup name | P 41 |
Unit cell lengths | 65.289, 65.289, 116.145 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.590 - 1.900 |
R-factor | 0.1767 |
Rwork | 0.174 |
R-free | 0.22661 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.477 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.970 |
High resolution limit [Å] | 1.900 | 4.090 | 1.900 |
Rmerge | 0.028 | 0.016 | 0.499 |
Rmeas | 0.032 | 0.019 | 0.587 |
Rpim | 0.016 | 0.009 | 0.303 |
Total number of observations | 127416 | ||
Number of reflections | 37037 | 3749 | 3756 |
<I/σ(I)> | 20.7 | ||
Completeness [%] | 96.1 | 95.9 | 97.4 |
Redundancy | 3.4 | 4.2 | 3.4 |
CC(1/2) | 0.999 | 0.998 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.01 M nickel chloride, 20% PEG 2000 MME, 0.1 M Tris, pH 8.5 |