8JDY
Crystal structure of mLDHD in complex with 2-ketoisocaproic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-12-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 81.650, 102.100, 123.080 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.020 - 1.590 |
R-factor | 0.1761 |
Rwork | 0.175 |
R-free | 0.20360 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.096 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASES |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.020 | 1.630 |
High resolution limit [Å] | 1.590 | 1.590 |
Rmerge | 0.059 | 1.382 |
Rmeas | 0.061 | 1.444 |
Rpim | 0.017 | 0.412 |
Total number of observations | 886449 | 61178 |
Number of reflections | 69238 | 5108 |
<I/σ(I)> | 22 | 2.1 |
Completeness [%] | 100.0 | |
Redundancy | 12.8 | 12 |
CC(1/2) | 1.000 | 0.671 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 289 | 4.0 M sodium formate |