8JBJ
Crystal structure of anti-PVRIG Fab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2022-04-25 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.268, 76.408, 192.424 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.180 - 1.610 |
R-factor | 0.1864 |
Rwork | 0.184 |
R-free | 0.22550 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.827 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.17.1_3660: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 10.000 | 1.710 |
High resolution limit [Å] | 1.610 | 4.820 | 1.610 |
Rmerge | 0.117 | 0.072 | 0.767 |
Rmeas | 0.127 | 0.078 | 0.909 |
Number of reflections | 122876 | 8840 | 15300 |
<I/σ(I)> | 12.16 | ||
Completeness [%] | 84.6 | ||
Redundancy | 5.7 | ||
CC(1/2) | 0.997 | 0.995 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 293 | 21% PEG3350, 0.4 M Potassium Formate |