8J5W
The crystal structure of TrkA(F589L) kinase in complex with N-(3-cyclopropyl-5-((4-methylpiperazin-1-yl)methyl)phenyl)-4^6-methyl-14-oxo-5-oxa-13-aza-1(3,6)-imidazo[1,2-b]pyridazina-4(1,3)-benzenacyclotetradecaphan-2-yne-4^5-carboxamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CAMD BEAMLINE GCPCC |
Synchrotron site | CAMD |
Beamline | GCPCC |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-12-26 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.978690 |
Spacegroup name | P 31 1 2 |
Unit cell lengths | 51.677, 51.677, 229.152 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.051 - 2.280 |
R-factor | 0.221738725573 |
Rwork | 0.217 |
R-free | 0.26599 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.766 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692+SVN) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.360 |
High resolution limit [Å] | 2.280 | 2.280 |
Number of reflections | 16465 | 16465 |
<I/σ(I)> | 7.5 | |
Completeness [%] | 100.0 | |
Redundancy | 19.3 | |
CC(1/2) | 0.972 | 0.516 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.1M Na2HPO4/KH2PO4 (pH 6.2), 2M NaCl |