8J5U
Crystal structure of Mycobacterium tuberculosis OppA complexed with an endogenous oligopeptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.643, 56.986, 101.902 |
Unit cell angles | 90.00, 122.29, 90.00 |
Refinement procedure
Resolution | 48.880 - 1.980 |
Rwork | 0.181 |
R-free | 0.22600 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.18_3845: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 1.980 | 8.860 | 1.980 |
Rmerge | 0.135 | 0.035 | 1.069 |
Rmeas | 0.146 | 0.038 | 1.163 |
Number of reflections | 39151 | 475 | 2853 |
<I/σ(I)> | 10.51 | ||
Completeness [%] | 99.5 | ||
Redundancy | 6.4 | ||
CC(1/2) | 0.997 | 0.999 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289.15 | 100 mM HEPES (pH 7.5), 24% (w/v) polyethylene glycol 1500 (PEG1500), 200 mM L-proline. |