8IXZ
Structure of Acb2 complexed with 3',2'-cGAMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-17 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 104.045, 104.045, 101.141 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.790 - 2.330 |
R-factor | 0.2328 |
Rwork | 0.231 |
R-free | 0.27380 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.016 |
RMSD bond angle | 2.484 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20_4459: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.360 |
High resolution limit [Å] | 2.320 | 6.290 | 2.320 |
Rmerge | 0.081 | 0.040 | 0.584 |
Rmeas | 0.084 | 0.041 | 0.608 |
Rpim | 0.020 | 0.010 | 0.165 |
Number of reflections | 27614 | 1500 | 1352 |
<I/σ(I)> | 10.9 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 17.6 | 16.5 | 13.1 |
CC(1/2) | 1.000 | 0.998 | 0.975 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG 3350, Sodium bromide |