8IVD
COMPLEX STRUCTURE OF CD93-IGFBP7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL10U2 |
Synchrotron site | SSRF |
Beamline | BL10U2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9790 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 131.512, 208.895, 77.580 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.950 - 3.240 |
R-factor | 0.2464 |
Rwork | 0.244 |
R-free | 0.30180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.464 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.200 | 3.500 |
High resolution limit [Å] | 3.240 | 3.240 |
Rmerge | 0.200 | 2.140 |
Rmeas | 0.200 | |
Rpim | 0.090 | 1.000 |
Number of reflections | 17340 | 3495 |
<I/σ(I)> | 9.4 | 1.3 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 12 | 10.4 |
CC(1/2) | 0.996 | 0.480 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 0.1 M imidazole, 20% w/v PEG monomethyl ether 2000, and 0.2 M ammonium citrate tribasic pH 7.0 |