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8INY

Crystal Structure of SARS-CoV-2 Main Protease (Mpro) K90R Mutant in Complex with Inhibitor ensitrelvir

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-04
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.953740
Spacegroup nameC 1 2 1
Unit cell lengths96.351, 82.076, 51.476
Unit cell angles90.00, 114.70, 90.00
Refinement procedure
Resolution29.300 - 1.590
R-factor0.1919
Rwork0.191
R-free0.21480
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.904
Data reduction softwareautoPROC
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (V1.20)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.30029.3001.680
High resolution limit [Å]1.5904.7001.590
Rmerge0.0420.0290.538
Rmeas0.0450.0320.581
Number of reflections4918719387810
<I/σ(I)>20
Completeness [%]99.5
Redundancy6.9
CC(1/2)0.9990.9990.943
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1EVAPORATION2931.2%(3% w/v CHAPS, 3% w/v CHAPSO, 3% w/v Sodium glycocholate hydrate, 3% w/v Taurocholic acid sodium salt hydrate), 0.1M(Imidazole; MES monohydrate (acid))PH6.5, 30%(40% v/v PEG 500* MME; 20 % w/v PEG 20000)

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PDB entries from 2024-05-15

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