8IFQ
SARS-CoV-2 3CL protease (3CLpro) in complex with compound 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 45.564, 63.918, 105.364 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.100 - 1.960 |
R-factor | 0.1809 |
Rwork | 0.179 |
R-free | 0.21420 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.977 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.650 | 2.070 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.096 | 0.529 |
Rmeas | 0.105 | 0.576 |
Rpim | 0.041 | 0.227 |
Total number of observations | 137534 | 20148 |
Number of reflections | 21763 | 3210 |
<I/σ(I)> | 14.5 | 3.5 |
Completeness [%] | 95.4 | |
Redundancy | 6.3 | 6.3 |
CC(1/2) | 0.998 | 0.894 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM MES, pH5.5-6.5, 10%-25% PEG6000, 3% DMSO |