8IEE
Crystal structure of nanobody VHH-31 with MERS-CoV RBD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-X |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-25 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 158.020, 158.020, 132.703 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 26.810 - 3.210 |
Rwork | 0.243 |
R-free | 0.25180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.810 | 3.330 |
High resolution limit [Å] | 3.210 | 3.210 |
Number of reflections | 25408 | 2239 |
<I/σ(I)> | 5.79 | |
Completeness [%] | 80.2 | |
Redundancy | 6.4 | |
CC(1/2) | 0.958 | 0.772 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 0.1 M Tris, pH 7.5, 2.8 M sodium formate |