8IDO
Crystal structure of nanobody VHH-T148 with MERS-CoV RBD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-21 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.987 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 175.896, 47.190, 124.213 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 16.800 - 2.500 |
R-factor | 0.2223 |
Rwork | 0.220 |
R-free | 0.26180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 16.800 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Number of reflections | 36441 | 3443 |
<I/σ(I)> | 14.45 | |
Completeness [%] | 99.0 | |
Redundancy | 5.8 | |
CC(1/2) | 0.987 | 0.773 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 4% v/v Tacsimate pH 6.0, 12% w/v PEG 3350 |