8IC1
endo-alpha-D-arabinanase EndoMA1 D51N mutant from Microbacterium arabinogalactanolyticum in complex with arabinooligosaccharides
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-25 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 114.708, 137.731, 148.589 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.650 - 1.800 |
R-factor | 0.16074 |
Rwork | 0.159 |
R-free | 0.19049 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.581 |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | Aimless (0.7.9) |
Phasing software | MOLREP (11.9.02) |
Refinement software | REFMAC (5.8.0403) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.650 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.114 | 1.235 |
Rpim | 0.047 | 0.528 |
Number of reflections | 217228 | 10677 |
<I/σ(I)> | 12 | 2 |
Completeness [%] | 100.0 | |
Redundancy | 6.7 | |
CC(1/2) | 0.625 | 0.625 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 303.15 | 0.12 M MES-NaOH (pH 6.0), 5% PEG3000, 20% PEG200, 5 mM arabinononaose with acetonide tag |