8I4N
Crystal strcuture of 6-phosphogluconate dehydrogenase from Corynebacterium glutamicum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-12 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.897, 120.297, 152.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.990 - 2.410 |
R-factor | 0.20288 |
Rwork | 0.200 |
R-free | 0.26708 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.615 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (7.1.000) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.440 |
High resolution limit [Å] | 2.400 | 6.510 | 2.400 |
Rmerge | 0.972 | 0.066 | 0.301 |
Total number of observations | 142308 | ||
Number of reflections | 74209 | 4292 | 3361 |
<I/σ(I)> | 9.3 | ||
Completeness [%] | 84.5 | 97.2 | 75.7 |
Redundancy | 1.9 | 2.3 | 1.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | PEG 8000, Tris, MgCl2 |