8HZ2
Tumor Necrosis Factor Receptor Associated Factor 6 (TRAF6) N-terminal Domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU PhotonJet-R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-10 |
Detector | RIGAKU HyPix-3000 |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 |
Unit cell lengths | 45.885, 51.705, 54.300 |
Unit cell angles | 91.04, 112.15, 108.43 |
Refinement procedure
Resolution | 5.998 - 2.600 |
R-factor | 0.3541 |
Rwork | 0.348 |
R-free | 0.40860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hcs |
RMSD bond length | 0.002 |
RMSD bond angle | 0.538 |
Data reduction software | CrysalisPro (1.171.42.35a) |
Data scaling software | CrysalisPro (1.171.42.35a) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 5.998 | 2.685 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 12134 | 1157 |
<I/σ(I)> | 3.12 | |
Completeness [%] | 90.5 | |
Redundancy | 1.5 | |
CC(1/2) | 0.920 | 0.380 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277 | 1.2 M Sodium Citrate Tribasic Dihydrate and 0.1 M TRIS 8.5 |