8HTF
Crystal structure of an effector in complex with ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.965, 75.107, 50.486 |
Unit cell angles | 90.00, 99.47, 90.00 |
Refinement procedure
Resolution | 49.798 - 2.151 |
R-factor | 0.1752 |
Rwork | 0.173 |
R-free | 0.22340 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3228) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.190 |
High resolution limit [Å] | 2.150 | 5.830 | 2.150 |
Rmerge | 0.112 | 0.092 | 0.301 |
Rmeas | 0.122 | 0.101 | 0.330 |
Rpim | 0.047 | 0.039 | 0.132 |
Total number of observations | 99586 | ||
Number of reflections | 15450 | 806 | 699 |
<I/σ(I)> | 5.5 | ||
Completeness [%] | 98.7 | 98.1 | 90.8 |
Redundancy | 6.4 | 6.5 | 5.5 |
CC(1/2) | 0.995 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.25 | 289 | 100 mM sodium cacodylate, pH 6.25, 200 mM sodium acetate, 22% PEG 8000, 25% glycerol |