8HQA
Crystal structure of the ectodomain of the MlaD protein from Escherichia coli in the resting state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-12-12 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 64.280, 64.280, 231.060 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 61.930 - 3.200 |
R-factor | 0.21008 |
Rwork | 0.206 |
R-free | 0.27543 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.812 |
Data reduction software | MOSFLM (7.4.0) |
Data scaling software | Aimless (0.7.9) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.020 | 3.420 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.166 | 0.552 |
Rmeas | 0.175 | 0.582 |
Rpim | 0.053 | 0.177 |
Total number of observations | 86434 | 15458 |
Number of reflections | 8680 | 1516 |
<I/σ(I)> | 9.6 | 3.5 |
Completeness [%] | 99.8 | |
Redundancy | 10 | 10.2 |
CC(1/2) | 0.994 | 0.934 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 8.5 | 293 | 0.01 M nickel(II) chloride hexahydrate, 0.1 M tris pH 8.5, 20% (w/v) PEG monoethyl ether 2000 |