8HOM
Crystal Structure of SARS-CoV-2 Omicron Main Protease (Mpro) in Complex with Ensitrelvir
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953740 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 97.020, 81.493, 51.545 |
Unit cell angles | 90.00, 114.61, 90.00 |
Refinement procedure
Resolution | 29.250 - 1.560 |
R-factor | 0.1711 |
Rwork | 0.170 |
R-free | 0.19610 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.917 |
Data reduction software | AutoProcess |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (V1.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.250 | 29.250 | 1.650 |
High resolution limit [Å] | 1.560 | 4.620 | 1.560 |
Rmerge | 0.038 | 0.024 | 0.573 |
Rmeas | 0.042 | 0.026 | 0.617 |
Number of reflections | 52134 | 2048 | 8318 |
<I/σ(I)> | 21.68 | ||
Completeness [%] | 99.5 | ||
Redundancy | 6.9 | ||
CC(1/2) | 1.000 | 1.000 | 0.928 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 293 | 0.1 M Tris pH 7.6, 14% v/v ethylene glycol, 7% w/v PEG 8000 |